Brain/MINDS Marmoset Reference Atlas Package Download

About the Atlas

The current Brain/MINDS Marmoset Reference Brain is a multi-modal Nissl & MRI 3D brain atlas where the Nissl histology data has been normalized to the MRI shape. The brain region annotation is now version 6.2, revised from the Hashikawa et. al (2015). The atlas contains over 200 cortical and sub-cortical annotations per hemisphere and improves upon the work of Hashikawa et al. (2015). State-of-the-art registration algorithms were used to register the different data modalities to one another and to remove noise and artifacts. The original Nissl and parcellation data (for one hemisphere only) have been warped to match the ex-vivo MRI data, then mirrored across the sagittal plane. The brain atlas can be used for tasks such as brain region identification and data analysis, such as connectomics.

Brain/MINDS Marmoset Reference Atlas Package

November 22, 2017
v1.0
  • MRI T2 ex-vivo volume. Version 1.0.
  • Nissl volume registered to MRI. Version 1.0.
  • Brain region segmentation volume. Version 1.0.
  • Gray and white matter boundary segmentation volume. Version 1.0.
  • Mid-cortical boundary segmentation volume. Version 1.0.
  • Color lookup table for bma-1-regionseg.nii. Version 1.0.
  • 3D Slicer scene file. Version 1.0.
New

Brain/MINDS Marmoset Brain Atlas Package

November 28, 2019
v1.2
  • Symmetric average brain Version 1.0 (NEW)
  • MRI T2 ex-vivo volume. Version 1.0.
  • Nissl volume registered to MRI. Version 1.0.
  • Brain region segmentation volume. Version 1.0.
  • Gray and white matter boundary segmentation volume. Version 1.0.
  • Mid-cortical boundary segmentation volume. Version 1.0.
  • Color lookup table for bma-1-regionseg.nii. Version 1.0.
  • 3D Slicer scene file. Version 1.0.
New

Brain/MINDS Marmoset Brain Atlas Package

November 28, 2019
v1.1
  • Asymmetric average brain Version 1.0 (NEW)
  • MRI T2 ex-vivo volume. Version 1.0.
  • Nissl volume registered to MRI. Version 1.0.
  • Brain region segmentation volume. Version 1.0.
  • Gray and white matter boundary segmentation volume. Version 1.0.
  • Mid-cortical boundary segmentation volume. Version 1.0.
  • Color lookup table for bma-1-regionseg.nii. Version 1.0.
  • 3D Slicer scene file. Version 1.0.
New

Release History

v1.0 : Released on November 22, 2017

Brain/MINDS Marmoset Brain Atlas Package

November 22, 2017
v1.0
  • MRI T2 ex-vivo volume. Version 1.0.
  • Nissl volume registered to MRI. Version 1.0.
  • Brain region segmentation volume. Version 1.0.
  • Gray and white matter boundary segmentation volume. Version 1.0.
  • Mid-cortical boundary segmentation volume. Version 1.0.
  • Color lookup table for bma-1-regionseg.nii. Version 1.0.
  • 3D Slicer scene file. Version 1.0.
New

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