BMA 2017 Ex Vivo (Brain Space 1)
Authors: Alexander Woodward1*, Tsutomu Hashikawa1,4, Masahide Maeda1, Takaaki Kaneko2, Keigo Hikishima3, Atsushi Iriki4, Hideyuki Okano2, Yoko Yamaguchi1
1. Neuroinformatics Japan Center, RIKEN Brain Science Institute,
2. Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute,
3. Animal Resources Section, Okinawa Institute of Science and Technology Graduate University,
4. Laboratory for Symbolic Cognitive Development, RIKEN Brain Science Institute,
*corresponding authors: Alexander Woodward (email@example.com), Yoko Yamaguchi (firstname.lastname@example.org)
This page serves the Brain/MINDS 3D Marmoset Reference Atlas dataset for downloading. The dataset includes NIfTI files of MRI T2 ex-vivo data; reconstructed Nissl stained images of the same brain, registered to the shape of the MRI; brain region segmentation (with separate color lookup table); and gray, mid-cortical and white matter boundary segmentation. In addition, a 3D Slicer scene file is provided that can be used for testing the dataset within the freely downloadable 3D Slicer software (https://www.slicer.org/). The scene file can be dragged directly into 3D Slicer and the atlas can be used immediately. Files can be downloaded individually or as one zip file.
The atlas can be viewed online via the Zooming Atlas Viewer (ZAV) by clicking here.
KEYWORDS : digital atlas, marmoset, Callithrix jacchus, brain, reference atlas, 3D, NIfTI, data download, brain atlas, 3D Slicer
Woodward, Alexander; Hashikawa, Tsutomu; Maeda, Masahide; Kaneko, Takaaki; Hikishima, Keigo; Iriki, Atsushi; Okano, Hideyuki; Yamaguchi, Yoko (2017): The Brain/MINDS 3D Marmoset Reference Atlas Dataset (DataID: 2799) https://doi.org/10.24475/bma.2799
The technical details of the data and its generation is available in the following article:
Woodward, Alexander; Hashikawa, Tsutomu; Maeda, Masahide; Kaneko, Takaaki; Hikishima, Keigo; Iriki, Atsushi; Okano, Hideyuki; Yamaguchi, Yoko (2017): The Brain/MINDS 3D digital marmoset brain atlas. https://www.nature.com/articles/sdata20189