{
"title": "Brain\/MINDS Age-Specific Marmoset Averaged Image Dataset",
"description": "The dataset includes gziped NIfTI files (.nii.gz) of MRI T2WI and DTI metrics (FA, MD, RD, and AD) in-vivo data; the ages of the data are 1,3,6,9,12,15,18 months old.\r\n
The creation process of these averaged images is referred to the script of FSL software ([https:\/\/fsl.fmrib.ox.ac.uk\/](https:\/\/fsl.fmrib.ox.ac.uk\/)), `fslvm_2_template`, partially modified; the non-linear registration process was replaced to the script of ANTs ([http:\/\/stnava.github.io\/ANTs\/](http:\/\/stnava.github.io\/ANTs\/)), `antsRegsitrationSyN.sh`. The details are described in the text [\u201cDataset Description and Image Processing\u201d](https:\/\/dataportal.brainminds.jp\/download\/3743).\r\n
In addition, age-specific DWI templates (.mif files) are provided, which are created using the script of Mrtrix3 ([http:\/\/www.mrtrix.org\/](http:\/\/www.mrtrix.org\/)), `population_template`. You may convert .mif file to NIFTI, extracting b-vector and b-value information by conducting the following Mrtrix3\u2019s command: `# mrconvert dwi_input.mif dwi_output.nii -export_grad_fsl bvec bval`\r\n
\nFiles can be downloaded each image type or as one zip file.",
"extraProperties": [
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"values": {
"value": "external"
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"category": "origin_institution",
"values": {
"value": "Department of Physiology (Okano Lab), Keio University School of Medicine"
}
}
],
"version": 1,
"identifier": {
"identifier": "https:\/\/doi.org\/10.24475\/bminds.mri.kau.3236",
"identifierSource": "DOI"
},
"keywords": [
{
"value": "marmoset"
},
{
"value": "Callithrix jacchus"
},
{
"value": "brain"
},
{
"value": "MRI"
},
{
"value": "NIfTI"
},
{
"value": "DTI metrics"
},
{
"value": "age-specific"
}
],
"types": {
"method": {
"value": "MRI"
}
},
"dates": [
{
"type": {
"value": "Creation Date"
},
"date": "2017-06-15"
},
{
"type": {
"value": "Publication Date"
},
"date": "2017-06-15"
}
],
"license": "Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)",
"creators": [
{
"firstName": "Akiko",
"lastName": "Uematsu",
"fullName": "Akiko Uematsu",
"roles": [
{
"value": "Principal Creator"
}
],
"affiliations": [
{
"name": "Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine"
}
]
},
{
"firstName": "Junichi",
"lastName": "Hata",
"fullName": "Junichi Hata",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute"
}
]
},
{
"firstName": "Yuji",
"lastName": "Komaki",
"fullName": "Yuji Komaki",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Central Institute for Experimental Animals"
}
]
},
{
"firstName": "Fumiko",
"lastName": "Seki",
"fullName": "Fumiko Seki",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine"
}
]
},
{
"firstName": "Chihoko",
"lastName": "Yamada",
"fullName": "Chihoko Yamada",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Central Institute for Experimental Animals"
}
]
},
{
"firstName": "Norio",
"lastName": "Okahara",
"fullName": "Norio Okahara",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Central Institute for Experimental Animals"
}
]
},
{
"firstName": "Yoko",
"lastName": "Kurotaki",
"fullName": "Yoko Kurotaki",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Central Institute for Experimental Animals"
}
]
},
{
"firstName": "Erika",
"lastName": "Sasaki",
"fullName": "Erika Sasaki",
"roles": [
{
"value": "Creator"
}
],
"affiliations": [
{
"name": "Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine"
},
{
"name": "Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute"
},
{
"name": "Central Institute for Experimental Animals"
}
]
},
{
"firstName": "Hideyuki",
"lastName": "Okano",
"fullName": "Hideyuki Okano",
"roles": [
{
"value": "Creator"
},
{
"value": "Corresponding Creator"
}
],
"email": "hidokano@a2.keio.jp",
"affiliations": [
{
"name": "Department of Physiology (Okano Lab), Keio University School of Medicine, Keio University School of Medicine"
},
{
"name": "Laboratory for Marmoset Neural Architecture, RIKEN Brain Science Institute"
},
{
"name": "Central Institute for Experimental Animals"
}
]
}
],
"distributions": [
{
"access": {
"landingPage": "https:\/\/dataportal.brainminds.jp\/mri-data-page\/orbitofrontal-limbic-maturation-mri-templates"
},
"version": 1,
"formats": [
"NIfTI"
],
"size": "3.1",
"unit": {
"value": "GB"
},
"extraProperties": [
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"category": "files",
"values": {
"value": 6
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"acknowledges": {
"funders": [
{
"@id": "https:\/\/doi.org\/10.13039\/501100001691",
"name": "Japan Society for the Promotion of Science (JSPS)"
},
{
"@id": "https:\/\/doi.org\/10.13039\/100009619",
"name": "Japan Agency for Medical Research and Development (AMED)"
}
]
}
}