Developmental Age-Specific Brain Templates Dataset (DataID: 3405)


Authors: Fumiko Sekia,b,c, Keigo Hikishimaa,b,d, Yuji Komakia,b, Junichi Hataa,b,c, Akiko Uematsua,b,c, Norio Okaharab, Masafumi Yamamotob, Haruka Shinoharab, Erika Sasakia,b, Hideyuki Okanoa,c*

a Department of Physiology, Keio University School of Medicine,
b Central Institute for Experimental Animals,
c Laboratory for Marmoset Neural Architecture, Brain Science Institute RIKEN,
d Okinawa Institute of Science and Technology Graduate University,
*corresponding author: H Okano (hidokano@a2.keio.jp)

DATASET DESCRIPTION

This page serves as the dataset for developmental age-specific templates for downloading.
The dataset includes NifTI files of MRI T1-weighted images data and T2-weighted images at the age of 1 month, 3 months, 6 months, 12 months, 18 months, and 24 months.
The templates at the age of 18 and 24 months were registered to the stereotaxic coordinates defined in Paxinos[1] and Woodward et al[2]. For the template at the age of 1, 3, 6, 12 months, we newly defined the stereotaxic coordinates. For details regarding the procedure, please download Additional_information_about_the_dataset.pdf.

[1] Paxinos G. The marmoset brain in stereotaxic coordinates. Academic Press. 2012.
[2] Woodward A, Hashikawa T, Maeda M, Kaneko T, Hikishima K, Iriki A, Okano H, Yamaguchi Y. The Brain / MINDS 3D digital marmoset brain atlas. DOI: https://doi.org/10.24475/bma.2799

CITATION

Fumiko, Seki; Keigo, Hikishima; Yuji, Komaki; Junichi, Hata; Akiko, Uematsu; Norio, Okahara; Masafumi, Yamamoto; Haruka, Shinohara; Erika, Sasaki; Hideyuki, Okano (2017): Developmental age-specific brain templates Dataset (DataID: 3405)

https://doi.org/10.24475/bminds.mri.kfs.3405

RELATED PUBLICATION(S)

Seki F, Hikishima K, Komaki Y, Hata J, Uematsu A, Okahara N, Yamamoto M, Shinohara H, Sasaki E, Okano H. Developmental trajectories of macroanatomical structures in common marmoset brain. Neuroscience, 364(19):143-156, 2017.

DOI: https://doi.org/10.1016/j.neuroscience.2017.09.021
Details of materials and methods about the template reconstruction are available there.

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Additional_information_about_the_dataset.pdfThe details about the stereotaxic coordinates in developing brain
1month.zipN=13 (male, 7; female, 6)
3months.zipN=15 (male, 7; female, 8)
6months.zipN=16 (male, 9; female, 7)
12months.zipN=16 (male, 8; female, 8)
18months.zipN=17 (male, 7 female, 10)
24months.zipN=13 (male, 5; female, 8)
All.zipInclude all of the above
The .zip file includes both head and brain images of T1-weighted image and T2-weighted image